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Samuel Aleer

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Samuel Aleer

 

Thesis title

Metagenomics: Screening of functional genes associate with polycyclic aromatic hydrocarbon bioremediation in contaminated soils.

Project description

Characterisation of microbial community diversity and functionality has been difficult to date due to limitations in traditional culture-based methodologies and molecular techniques. However, next generation high throughput pyrosequencing (metagenomics) offers direct access to uncharacterised microbial communities – bypassing the limitations of both molecular and traditional methods.  The use of this technique will allow for accurate identification of novel functional genes and enzymes affiliated with PAH-degrading microorganism which will address current gaps in understanding of microbial communities in PAH-contaminated soil. Accessing microbial communities directly, without laboratory cultivation and isolation methods,  will not only further our understanding of the mechanisms underlying the ways organisms responded to contamination,  but will also improve the approaches we use when assessing contaminants.

Student Profile

Samuel has a Bachelors Degree and Honours from Flindres University which he completed in 2008. During his studies Samuel won the Inaugural Flinders University Business Plan Competition award in 2008 for the development of a successful business plan.

Publications

Adetutu, EM, Ball, AS, Weber, J, Aleer, S, Dandie, CE & Juhasz, AL 2012, Impact of bacterial and fungal processes on 14C-hexadecane mineralisation in weathered hydrocarbon contaminated soil, Science of the Total Environment, vol. 414, pp. 585–591.

Aburto-Medina, A, Adetutu, EM, Aleer, S, Weber, J, Patil, SS, Sheppard, PJ, Ball, AS & Juhasz, AL 2012, Comparison of indigenous and exogenous microbial populations during slurry phase biodegradation of long-term hydrocarbon-contaminated soil, Biodegradation, vol. 23, iss. 6, pp. 813–822.

Adetutu, E, Weber, J, Aleer, S, Dandie, CE, Aburto-Medina, A, Ball, AS & Juhasz, AL 2012, Assessing impediments to hydrocarbon biodegradation in weathered contaminated soils’, Journal of Hazardous Materials, vol. 261, pp.847–853.

Adetutu, EM, Smith, RJ, Weber, J, Aleer, S, Mitchell, JG, Ball, AS & Juhasz, AL 2013, A polyphasic approach for assessing the suitability of bioremediation for the treatment of hydrocarbon-impacted soil, Science of the Total Environment, vol. 450–451, pp. 51–58.